Mtb Gene Mutation Annotation Chatbot

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Mtb Gene Mutation Annotation Chatbot is a novel approach that employs large language models (LLMs) for automated variant annotation. By integrating publicly available resources such as TBProfiler and WHO variant datasets and using retrieval-augmented generation (RAG) with fine-tuning methods, we enable LLMs to respond to user queries with accurate, context-aware variant interpretations. Our aim to significantly reduce manual effort and enable faster, more dynamic interaction with genomic information to deliver a scalable, accessible tool that supports rapid MTB research and clinical decision-making.

How to use Chatbot?
You Can Ask Questions:

  1. What mutation occurs at position 761155?
  2. What are all the mutations between position 761000 and 761200?
  3. Which drug is affected by C>T at 761155?
  4. Is the mutation at 761155 high-confidence?
  5. Which gene includes position 2155168?

Mtb Gene Mutation Chatbot